PyTEM is a Python based TEM simulation and processing toolkit.

Features:

• Multislice calculations
• Blochwave calculations
• Howie-Whelan-Basinski calculations
• Geometry based sample properties (e.g. strain from FEM calculations)
• Fitting of simulation parameters to experimental images
• Many import/export filters: e.g. DM3, HDF5, TDF, EMD (partially), EMS, JEMS (partially), VTK (partially)
• Parallel execution on SMP system

For details please contact: Tore Niermann

Holoaverage is a Python program for the reconstruction and averaging of series of off-axis electron holograms recorded in a transmission electron microscope. The averaging is performed iteratively, such that instabilities of the microscope, like specimen and biprism drifts, can be tracked and corrected between consecutive exposures.

• Online-Documentation: https://holoaverage.readthedocs.io
• Sources: https://github.com/niermann/holoaverage
• Project page in PyPI (Python Package Index)

Details of the averaging procedure can be found in the accompanying paper:

This is a plugin allowing to read and write HDF5 files under DigitalMicrograph by Gatan Inc. The plugin provides functions to be called from the DigitalMicrograph scripting language.

• Releases: https://github.com/niermann/gms_plugin_hdf5/releases
• Sources: https://github.com/niermann/gms_plugin_hdf5

The temscript module provides a Python wrapper for the scripting of FEI microscopes (Tecnai & Titan). Additionally it provides a HTTP-based interface for remote scripting.

• Sources: https://github.com/niermann/temscript